RnoEX0052029 @ rn6
Exon Skipping
Gene
ENSRNOG00000012559 | Man1b1
Description
mannosidase, alpha, class 1B, member 1 [Source:RGD Symbol;Acc:1563595]
Coordinates
chr3:2561069-2565080:+
Coord C1 exon
chr3:2561069-2561257
Coord A exon
chr3:2562048-2562083
Coord C2 exon
chr3:2564890-2565080
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGCTTCTATTCCTAGCCC
3' ss Score
8.26
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
GAGGATTTTGGAAACCGGTTAATGCCTGCCTTCACCACACCCTCCAAGATTCCATACTCTGATGTGAACATTGGCACTGGGTTTGCCCACTCGCCCCAGTGGACTTCAGACAGCACGGTGGCAGAAGTGACGAGCATTCAGTTGGAGTTCCGAGAGCTCTCCCGTCTTACCGGGATTAAGAAATTCCAG
Seq A exon
CCCCTGACAGCTCCAGGCTTCTGTCTCTGGGAAGGG
Seq C2 exon
GAGGCCGTGGAGGAAGTGACAAAGCACATCCACTCCCTGTCTGGGAAGAAAGACGGGCTGGTGCCTATGTTCATCAACACGAACAGCGGCCTCTTCACCCACCCGGGAGTGTTCACCTTGGGTGCCAGGGCTGACAGCTACTACGAATACCTGCTGAAACAGTGGATCCAGGGTGGCAAGAAGGAGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012559_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(14.1=100)
A:
PF0153215=Glyco_hydro_47=FE(2.4=100)
C2:
PF0153215=Glyco_hydro_47=FE(14.3=100)
Main Inclusion Isoform:
ENSRNOT00000016846fB8287
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAAGTGACGAGCATTCA
R:
AGACAGGGAGTGGATGTGCTT
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]