RnoEX0052221 @ rn6
Exon Skipping
Gene
ENSRNOG00000001047 | Map2k7
Description
mitogen activated protein kinase kinase 7 [Source:RGD Symbol;Acc:1560043]
Coordinates
chr12:2550594-2553396:-
Coord C1 exon
chr12:2553349-2553396
Coord A exon
chr12:2552169-2552232
Coord C2 exon
chr12:2550594-2550735
Length
64 bp
Sequences
Splice sites
3' ss Seq
AGGTGTGATCTTCACTCCAGGAG
3' ss Score
6.74
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TTATTGTGATCACTCTAAGCCCTGCTCCTGCCCCGTCCCAGCGAGCAG
Seq A exon
GAGCTGAGATACCAGATAAAAGAGGATCACATGTACTCATGGAAGCGAGCTGTGCACAGTTCTA
Seq C2 exon
CCTTGCAGCTCCCACTGGCCAACGATGGGGGCAGCCGCTCACCATCCTCAGAGAGCTCCCCACAGCACCCTACGCCCCCCAGCCGGCCCCGCCACATGCTGGGGCTCCCGTCAACCTTGTTCACACCTCGCAGTATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001047-'4-3,'4-2,5-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.794 A=0.455 C2=0.799
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000084460fB8318
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCTAAGCCCTGCTCCTG
R:
GGGAGCCCCAGCATGTGG
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]