RnoEX0052618 @ rn6
Exon Skipping
Gene
ENSRNOG00000017583 | Mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:RGD Symbol;Acc:1305363]
Coordinates
chr3:13522381-13571825:+
Coord C1 exon
chr3:13522381-13522529
Coord A exon
chr3:13553955-13554106
Coord C2 exon
chr3:13571653-13571825
Length
152 bp
Sequences
Splice sites
3' ss Seq
GGTTTTCTTTTCCCTAACAGCAC
3' ss Score
8.86
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
CCCAGGAGTTAAAGTCACTGTTTGAAAAAAAATCCCTCAAAGAGAAACCTCCAAGTTCGGGCAAGCAGTCCATATTGTCTGTGCGCCTGGAACAGTGCCCTCTGCAGCTGAATAACCCCTTTAATGAGTACTCCAAGTTTGATGGCAAG
Seq A exon
CACCATGGCCAGAGGGGAGCAGTGTGCTCAAGTAACCCAGCTCAGTGGACTTGCTGTCTTGCTCTCTCGATCGCTGCAGGTGCTGTCGGAAACCTTGCCCTTCCTGAGGCCCACTGACACCTCCACCACTCACAAGGGCCAAAGATTGATTT
Seq C2 exon
GGTCATGTGGGTACAACTGCAACGAAGAAGATCGACGTCTACCTCCCCCTGCACTCAAGCCAGGACAGACTGCTGCCAATGACTGTGGTGACCATGGCCAGCGCCAGGGTGCAGGACCTCATCGGGCTCATCTGTTGGCAGTACACGAGTGAAGGACGGGAGCCAAAGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017583_MULTIEX1-6/6=5-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF054227=SIN1=FE(10.6=100)
A:
PF054227=SIN1=PD(4.5=17.9)
C2:
PF054227=SIN1=FE(12.3=100)
Main Inclusion Isoform:
ENSRNOT00000023889fB8384
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCAAGCAGTCCATATTGT
R:
CGTCCTTCACTCGTGTACTGC
Band lengths:
250-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]