RnoEX0052703 @ rn6
Exon Skipping
Gene
ENSRNOG00000007084 | March10
Description
membrane associated ring-CH-type finger 10 [Source:RGD Symbol;Acc:1311692]
Coordinates
chr10:93591188-93593500:-
Coord C1 exon
chr10:93593072-93593500
Coord A exon
chr10:93592233-93592288
Coord C2 exon
chr10:93591188-93591594
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCCCGGCCCACACAGATG
3' ss Score
7.24
5' ss Seq
GCTGTGCGT
5' ss Score
3.77
Exon sequences
Seq C1 exon
GGACCGCACCTCGGCCAGGCGTCCGCTCACGGTTTCTCAGCGTGACTTCAGCGAGAGCCTCCTGCTCCTACAGGGACGTGACAGGGAGCAGGGCTTGGTCCCCAACTGGGAGACCTTCCGAGGGTCCTGTCGCCCCGGCCCCGCCCCGCCTCCGAGATGCCCGCATCGCTACCAGGTTGGGAACCTGCGGCACCGGGCGCGTCCGAAAGCGTTCGACTGGGCAGGGGCGCCCCCTAGTGTCCCGTGCGAGCGCTGTATCCTGTCCCCCGCGGGGGCTCGCCCAGACATAGGGTCGAAGCACAGGTTCAAGACCGGAAGGGCAGCTTTAGCTTCTAAACCTGCGTCACAGGAGGCTGTTCTCCCTGGGTTCGTCCCCAGGGGATGCTTAAAAAAGGAATCTCGGCAGCGTGGTGGCCTAAGCCGACTGCG
Seq A exon
ATGACCATCACCGAAGCCAAGAGGAAGGCCAGGAAGAGGGCTCATGGCCTGCTGCT
Seq C2 exon
GTTCCGAGTCTGGAGATGGCAATGAAAGCAACGTTTACCCAGGCCGGGTCATCTAGCAAGGGAGCTGGTCGTGGAGTGCGACAGAGACCTCTCCACCCAGAAGCCCTTTACGTGTCCCCCAGTGCCTCCCTTCTTCCCTCCTCTTTACTGAAACTGAAGCCAATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTTTGGGGGTCTGGCTTGAGCATCCATGGGCAGCCACAGGGACCTTCCCAGCCAGCACAGGCAAAACAGCCGAGCCCCCAGTGTGCTGCCCTGCTGCTGCCCCTCAGCCCAGAAGCCTGGGCTCCCAGTGCTGAGGCCCTCTGTTCAGGCCTCAGCCCACCCTGAGTCGAGTGGAGCCATGCATTCAGTAAACTGACTTTATTCTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007084-'47-50,'47-49,48-50
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.445
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000009316fB8403
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGGAATCTCGGCAGCGT
R:
CTGGGTGGAGAGGTCTCTGTC
Band lengths:
141-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]