RnoEX0053016 @ rn6
Exon Skipping
Gene
ENSRNOG00000014076 | Mbnl1
Description
muscleblind-like splicing regulator 1 [Source:RGD Symbol;Acc:628668]
Coordinates
chr2:150858306-150864121:+
Coord C1 exon
chr2:150858306-150858459
Coord A exon
chr2:150858750-150858772
Coord C2 exon
chr2:150864086-150864121
Length
23 bp
Sequences
Splice sites
3' ss Seq
ACTGTTGTATGTTTGTCAAGCTG
3' ss Score
4.2
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
Exon sequences
Seq C1 exon
GGAATTCCTCAAGCTGTACTTCCCCCATTGCCAAAGAGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTTAACACGGGTATTTTCCAATACCAACAGGCTCTAGCCAACATGCAGTTACAGCAGCATACAGCGTTCCTCCCACCAG
Seq A exon
CTGTGTTATGATGCTCTCCTGCT
Seq C2 exon
GCTCAATATTGTGCATGACACCCGCTACAAGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014076_MULTIEX1-9/11=8-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000088461fB8464
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCAGTCTTTAACACGGGTA
R:
CTTGTAGCGGGTGTCATGCAC
Band lengths:
118-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]