RnoEX0053642 @ rn6
Exon Skipping
Gene
ENSRNOG00000011315 | Med16
Description
mediator complex subunit 16 [Source:RGD Symbol;Acc:1308001]
Coordinates
chr7:12629578-12630455:+
Coord C1 exon
chr7:12629578-12629666
Coord A exon
chr7:12630095-12630178
Coord C2 exon
chr7:12630263-12630455
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTCTCGGTCTATAGGGT
3' ss Score
9.15
5' ss Seq
AAGGTTCGA
5' ss Score
5.49
Exon sequences
Seq C1 exon
ACATCGACAAAGTCATGATCAACCTGAAGACAGAAGAGTTTGTTCTAGACATGAACACTTTGCAGGCGCTGCAGCAGTTGCTACAATGG
Seq A exon
GGTGCTGAGCACAGTTCTGGCCTCCCCGACTCTGCCAGCCATGGCCCTGTGCTGAAGTCACATGTGTCCCCTGACTTCACCAAG
Seq C2 exon
GGCTCCGCACTGAGGCCGGGCCACAGCTTCCTCCGGGATGGTGCCTCACTGGGTATGCTGCGGGAATTGATGGTTGTCATCCGAATATGGGGCCTACTGAAGCCCAGTTGCCTGCCCGTCTATACAGCCACCTCAGACACCCAGGACAGCATGTCCCTGCTCTTCCGGCTGCTCACCAAGCTGTGGATTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011315_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(6.1=100)
A:
PF116353=Med16=FE(3.6=100)
C2:
PF116353=Med16=FE(8.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGAACACTTTGCAGGCG
R:
TGAGGTGGCTGTATAGACGGG
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]