RnoEX0053772 @ rn6
Exon Skipping
Gene
ENSRNOG00000013674 | Megf10
Description
multiple EGF-like domains 10 [Source:RGD Symbol;Acc:735084]
Coordinates
chr18:52215682-52260639:+
Coord C1 exon
chr18:52215682-52216391
Coord A exon
chr18:52225512-52225563
Coord C2 exon
chr18:52260507-52260639
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTTTGGACCTTGATTATAGATT
3' ss Score
4.69
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
TCACTCTCTCAAGCCCCGTGGTGAGTCTTAAGTTTGCCAACTTCTTGACTCAGTCACTGACTGGGGTCCCAGGAGTCCGGCCGGAAGGAGATTGCAGGTTTGGAGGGACCGCAAGCGAGCGACATCGCTCCCCCTCCCCAAACCTCCCCCCCACCGGCCACTGTCCCGGAGGCAGCAGCTGCAGCAGAGGCAACTGCTCGCATCCCAGCCGGGCTCGGGTTACCGCCTTCTTCCTCCAGCATCTCCTGCCAGACAGGGAAAAGCTTGATCAAGTTTGCAGCAGGACTCGGTCCCTGTGCAAAACTGGGGCTCCGGGACGGGCCTGCTTCCCCGCGTCCGCATCTCCAGAGCTTAAGCAAGACTAGCATACATTGCTTTCTCCTGGGACTCTGCTTGGAAGCCAGCAGCCGCGGTTGGGAAAAGATTTTGAATCTCGGCTGGAGTGGGTGAAGACCAGGGGAAAACAGGTTGCACTGCCAATCACAGCATTTCAGGACCGG
Seq A exon
ATTATCCTTGCAAATCCATTAAAAGAAGAAGAGACAAGTGGATTGTGGAGAG
Seq C2 exon
ATTGTTCTTCAAAGAAAATGGCTATTTCTTCAAGCTCCTGCCTGGGCCTCATCTGCTCACTGCTGTGCCACTGGCTGAGGGCAGCATCCTCACTGAACCTGGAAGACCCCAATGTATGCAGCCACTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013674_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(12.3=23.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGGTTGCACTGCCAATCA
R:
TCCAGGTTCAGTGAGGATGCT
Band lengths:
141-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]