RnoEX0054557 @ rn6
Exon Skipping
Gene
ENSRNOG00000017699 | Mill1
Description
MHC I like leukocyte 1 [Source:RGD Symbol;Acc:1311714]
Coordinates
chr1:79641605-79650244:+
Coord C1 exon
chr1:79641605-79641697
Coord A exon
chr1:79649510-79649773
Coord C2 exon
chr1:79649969-79650244
Length
264 bp
Sequences
Splice sites
3' ss Seq
CCATGAACCTGTCTCCTCAGGAC
3' ss Score
8.06
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TGGGTGACTACCAAAGACGAGTGCCTTCTGCCCCCAACACAGACATCAGGAACACTCTAGAGAAGCCTAGAGTAACCACACAGGAGGTAGCAG
Seq A exon
GACCCCACACTCTGCGCTATGACCTCATGGCCTTGTCTCTGAAGTTGCCTGAGTTGCCCCAGGTCCTGATCTGGAGATACTTTGATGATGAGCCCTTCCTACATTATAATGAAAGCAGCAACAGAACAGACTCCTGGGAACCTAGGATCAAGAGACATTGGAGAGCTATGACTTGGGCAAGAGAGACTGAGGATCTGCAGGAAATGGTGGAGCAACTCAAAAGGATGCTAGCTGAGGTCACAGGCCAGAAAGGCCAAGATAAGG
Seq C2 exon
GCCTTCACATCCTCCAGGCAACCCTGGGCTGTGAGCTTCAAAGAAATGGAAGCACTAGAGGCTTCTGGCACCTGGGCTATGACGGGCGGAACCTCCTCACCTTCGACCAGAAGACTCTCACATGGACAATGGATATGCCCTTCACCCAGCAGAAGAAGACGTTCTGGGAGCCACGTGCACCCAGGGCTGACCTAGTTAAGACGTTCTTGGATGACACATGTCCTGCTCAGCTCCAGAGACATCTGGCTTCCTTGAGAAGTGAACCACTTGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017699-'4-5,'4-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.469 A=0.056 C2=0.011
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
PF0012913=MHC_I=PU(50.0=98.9)
C2:
PF0012913=MHC_I=PD(49.4=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAACACAGACATCAGGA
R:
GAGCTGAGCAGGACATGTGTC
Band lengths:
296-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]