RnoEX0054558 @ rn6
Exon Skipping
Gene
ENSRNOG00000017699 | Mill1
Description
MHC I like leukocyte 1 [Source:RGD Symbol;Acc:1311714]
Coordinates
chr1:79649510-79652076:+
Coord C1 exon
chr1:79649510-79649773
Coord A exon
chr1:79649969-79650244
Coord C2 exon
chr1:79651552-79652076
Length
276 bp
Sequences
Splice sites
3' ss Seq
TCATTGCCTGGGTGGGCCAGGCC
3' ss Score
1.82
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GACCCCACACTCTGCGCTATGACCTCATGGCCTTGTCTCTGAAGTTGCCTGAGTTGCCCCAGGTCCTGATCTGGAGATACTTTGATGATGAGCCCTTCCTACATTATAATGAAAGCAGCAACAGAACAGACTCCTGGGAACCTAGGATCAAGAGACATTGGAGAGCTATGACTTGGGCAAGAGAGACTGAGGATCTGCAGGAAATGGTGGAGCAACTCAAAAGGATGCTAGCTGAGGTCACAGGCCAGAAAGGCCAAGATAAGG
Seq A exon
GCCTTCACATCCTCCAGGCAACCCTGGGCTGTGAGCTTCAAAGAAATGGAAGCACTAGAGGCTTCTGGCACCTGGGCTATGACGGGCGGAACCTCCTCACCTTCGACCAGAAGACTCTCACATGGACAATGGATATGCCCTTCACCCAGCAGAAGAAGACGTTCTGGGAGCCACGTGCACCCAGGGCTGACCTAGTTAAGACGTTCTTGGATGACACATGTCCTGCTCAGCTCCAGAGACATCTGGCTTCCTTGAGAAGTGAACCACTTGACACAG
Seq C2 exon
GTTCCCCGATGGTGATCGTGACCTTCAGGAATTATCCACTGGGCAGGGTCACACTGACATGCCGGGCTTTTAATCTGTATCCCCATATGGCCACCAGGGGCACCCTGGCCTGGCTTCAGGATAGGAAGCTGGTAAAGCAGAAAGCTTTTGAACCAGGGACCATCTTGCCCAGTGGGGACAGGACCTACCAGATCTGGGTGTCCATTTGGGTTCTTCCTGGACAGGAACCACAGTTCACCTGTAATCTGAGTTACCATGGTGGCAACATAGAGAAGCGTGCTGTTATTGTGAACACTGTCTCTGGTGAGAAAACAAGACAACCTTCCACCTCAGGTGTGGGAGGCAGGGTCAAGAAAAGCCTGTGGACTACAATGACCACAGCTTTTATGGTGACCTCCTGGACCAGGAAAACTGGTGGGGACTCCACTCTGCTTCTGCTCTGGTGGCTTCTGTTCTTTTCTACAGTGTTGGCAGTTCTGACCCTCGTCTAGAGCAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017699-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.011 C2=0.037
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(50.0=98.9)
A:
PF0012913=MHC_I=PD(49.4=93.5)
C2:
PF0765410=C1-set=WD(100=49.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGCTATGACTTGGGCA
R:
GATCTGGTAGGTCCTGTCCCC
Band lengths:
300-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]