RnoEX0054843 @ rn6
Exon Skipping
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84855705-84872854:+
Coord C1 exon
chr17:84855705-84855784
Coord A exon
chr17:84872192-84872382
Coord C2 exon
chr17:84872804-84872854
Length
191 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTCTCTCTCTCCAGCTC
3' ss Score
13.46
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
CTTGCTATGGCATTGTTCAAGTACCTACTGGACCATGGTTTTGTAGGAAATGTGAATCTCAGGAGAGAGCAGCCAGAGTG
Seq A exon
CTCTCTACTCAGTGCTGGTCTCCCTTGTGAGCTCTAGCCACCTTGGTTCCTTGGACTCCCAGCTCCATTTCCTCAACTTGGGGAGACACAGGCCCTGTCCTGGTTCCTCCTCCTTGTTCCTCCGCCTGAAAACTCTCCCAAGGCAGTAAGCTGGGCACCTTTGTGGCTGTGTCATGTTTCTTGTCTCTAAG
Seq C2 exon
TTGTTGCTTACTGTGAGCTAAGACACTTTGCCTAACCCCGAAGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249_MULTIEX1-1/13=C1-2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATTGTTCAAGTACCTACTGG
R:
TCATGACTTCGGGGTTAGGCA
Band lengths:
122-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]