RnoEX0054846 @ rn6
Exon Skipping
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84939957-84957070:+
Coord C1 exon
chr17:84939957-84940529
Coord A exon
chr17:84944667-84944711
Coord C2 exon
chr17:84956892-84957070
Length
45 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTCCTTATCCACAGAAA
3' ss Score
11.07
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
CAGCTTCACTGACTCGGACCTGCGGAATGACAGTTACACTCACACGCAGCCGCCACCGTCAACCAAAGATGTACATAAAGGGGAGCCTGGCAGCCAGGATGCAGGGGTGAACAGCTTTAGCTCTCTAGTTGGTCACCCTGGGACCTCAGGTGCGACTTCACAGCCGAAAAGCTTTGACAGCTCTCCTGGGGAGTTGGGCAGCTCCAGCCTTCCTACAGCAGGGTATAAGCGGGCTCAGACTTCTGGGGTAGAAGAGGAGGAAGCCGTGAAGGAAAAGAAACGGAAAGGGAATAAACAAAGCAAGCATGGCCCTGGCCGACCCAAAGGAAACAAGAACCAAGAAAATGTTTCTCACCTCTCGGTTTCTTCTGCTTCACCGACATCATCCGTGGCATCGGCTGCGGGGAGTGTGACAAGCTGTAGCCTTCAGAAGTCCCCCACGCTGCTCAGGAATGGAAGTATGCAGAGTCTCAGCGTGGGCTCGTCCCCGCTTGGCTCAG
Seq A exon
AAATTTCCATGCAGTATCGACATGATGGAGCTTGTCCAACAACTA
Seq C2 exon
GTATTTATAACAGCAATGATGTAGCCGTTTCCTTCCCAAACGTGGTGTCTGGCTCAGGATCGAGCACTCCCGTCTCCAGCTCTCATATACCTCAGCAGTCGTCTGGGCATTTGCAACAGGTGGGAGCTCTCTCCCCCTCGGCTGCGTCATCTGTAACCCCCGCTGCTGCTACAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249_MULTIEX1-12/13=11-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=0.850 C2=0.790
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCTTCAGAAGTCCCCCAC
R:
CTGAGCCAGACACCACGTTTG
Band lengths:
137-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]