RnoEX0056089 @ rn6
Exon Skipping
Gene
ENSRNOG00000012779 | Msr1
Description
macrophage scavenger receptor 1 [Source:RGD Symbol;Acc:1564316]
Coordinates
chr16:56874746-56883491:-
Coord C1 exon
chr16:56883378-56883491
Coord A exon
chr16:56876129-56876235
Coord C2 exon
chr16:56874746-56875155
Length
107 bp
Sequences
Splice sites
3' ss Seq
GTTTCCACCGCTCATTACAGTCC
3' ss Score
5.28
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACACTATAAATGGCTCCTCCGTTCAGGAGAAACTGAAGTCCTTCAAAGTTGCCCTCGTCGCTCTCTACCTCCTTGTGTTTGCAGTACTAATACCTGTTGTTGGAATAGTAACAG
Seq A exon
TCCCCAAAATTCACTGAACAGAACAGTTAGTTATTCTTGAAGATGGCGTTCATCACAAGACTGCTTTTCAAAACATTGACTGCGTTACTGACTAAGTTACTAAGTTG
Seq C2 exon
CTCAGCTTGTGAATTGGGAAATGAAGAACTGCTTAGTGGGTTCAGCTAACACAAGTGATACATCGCAAACTCTGACTGGAAAAGAAAACACCAGTAAAGCAGAAATGGGATTTACAATTGCCATGGAACGCATGAAGGCCTTGGAGGAGAGAGTCCAAAGCATTTCAGACTCAAAAGCTGGCCTTCTAGACACAGACCGCTTCCAGAACTTCAGCATGGCAACCGACCAAAGACTTAATGATCTTCTTCTGCAGTTAAATTCCTTGATTTCATCAGTCCAGGAACATGGGGAGTCCCTGGATGCAATTTCCAAGTCCTTGCAGAGTCTGAATACAACACTGCTTGATGTCCAGGTCCATACAGAAACACTGAATGTCAAAGTCCGCGAATCTACAGCAAAGCAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012779_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131661=AAA_13=PU(69.3=97.1),PF045827=Reo_sigmaC=PU(71.2=84.7),PF035238=Macscav_rec=WD(100=35.8),PF0076914=ERM=PU(47.7=46.0)
Main Inclusion Isoform:
ENSRNOT00000017339fB9037
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCGCTCTCTACCTCCTTG
R:
TCTGTGTCTAGAAGGCCAGCT
Band lengths:
256-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]