RnoEX0056696 @ rn6
Exon Skipping
Gene
ENSRNOG00000017949 | Mvb12a
Description
multivesicular body subunit 12A [Source:RGD Symbol;Acc:735220]
Coordinates
chr16:19974090-19976009:+
Coord C1 exon
chr16:19974090-19974186
Coord A exon
chr16:19974670-19974836
Coord C2 exon
chr16:19975883-19976009
Length
167 bp
Sequences
Splice sites
3' ss Seq
CATTCTCTTTTCCTTTCCAGGCT
3' ss Score
11.29
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AACCCTCAGGACAATGTGGTAGTGGACATGCAGATCGTGATGGACAAGGGGCCCCTGCCACCAGGCTTCTCTACAGTCAACGACCCTCAGGATGCCA
Seq A exon
GCTCTTGCACAGCGAGTCCACCTGGAGCTGGCTTTCCCTGCTCTCTGCATAGCTCAGCCTTCCCTCTCCCTTCTCCCCTGCCTGACCCAGCTGCCCGCCTCCCCGATGGTGCTTGGTTCTCTCGGTGTCTTTAGTGACGGCTGGCAGGCTGCCGTGCAGAGGGTCAG
Seq C2 exon
GGACCTCTGTGTCCAAGAAGAAGCGCATGTGTGTGAAGCTGATGCCCCTGGGGACGGCAGACGTGGTAGTGAGTGACGTGAAGCTCAGTGGGAAAACCAAGACCGTGCCTGGGTATCTGCGAGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017949_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=0.136 C2=0.116
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
PF102404=DUF2464=PD(4.4=8.9)
C2:
PF102404=DUF2464=FE(16.7=100)
Main Inclusion Isoform:
ENSRNOT00000024413fB9160
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCAGGACAATGTGGTAGT
R:
CACTCGCAGATACCCAGGCA
Band lengths:
221-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]