RnoEX0056911 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53718051-53746451:+
Coord C1 exon
chr10:53718051-53718149
Coord A exon
chr10:53718868-53718971
Coord C2 exon
chr10:53746345-53746451
Length
104 bp
Sequences
Splice sites
3' ss Seq
GCCCTCGTCCATGTATTTAGAAA
3' ss Score
5.7
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATCTGCTAGAGAAGTCCCGGGTCACTTTCCAGCTTAAGGCGGAAAGGAGCTACCATATATTTTATCAAATCACATCCAACAAGAAGCCAGAGCTGATCG
Seq A exon
AAATGCTGCTGATCACCACAAACCCATACGATTACCCATTCGTCAGTCAAGGGGAGATCAGTGTGGCCAGCATTGATGACCAGGAAGAACTGATGGCCACGGAT
Seq C2 exon
AAATGCTCCTGATCACCACCAACCCATACGACTACGCCTTTGTCAGTCAGGGGGAGATCACAGTGCCCAGCATTGATGACNNCCAAGAAGAGTTGATGGCCACAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX1-1/41=C1-37
Average complexity
C2
Mappability confidence:
95%=100=95%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
PF0006316=Myosin_head=FE(7.6=100)
C2:
PF0006316=Myosin_head=FE(5.1=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCTAGAGAAGTCCCGGG
R:
TGTGGCCATCAACTCTTCTTGG
Band lengths:
203-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]