RnoEX0057004 @ rn6
Exon Skipping
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:764421-777057:+
Coord C1 exon
chr10:764421-764552
Coord A exon
chr10:764666-764782
Coord C2 exon
chr10:776697-777057
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGATTGTCATCTCTTATAAGGAC
3' ss Score
6.39
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GGTAGCGCTGACTCTATAAAGCCAGATGTCCGAAGCATACAGAGAGATTTGGACCATCCCAGCCTGGGATCAGTGTCAGATCCGAGCTCTCCATCCGGTGTTCTCCTGCTAGTCCACCCCAGTAGCAGATCT
Seq A exon
GACAGTGGGAAGAAGCCCGGTACAGGACCACCCTAGACCTCCCGTGATTACTCCCATTCTCCGCACCAAACCAGCATCCTCAGGTTGCCTATGAACAGAACCACCTGGGAAAGTGGG
Seq C2 exon
GGGACCACCAAGCACAATGGCACAGAAAGGGCAGCTCAGTGATGATGAGAAGTTCCTCTTTGTGGATAAAAACTTCATAAACAGCCCAATGGCCCAGGCCGACTGGGTAGCCAAGAAGCTAGTATGGGTCCCTTCAGAGAAGCAGGGCTTCGAAGCAGCCAGCATCAAGGAGGAGAAGGGCGATGAGGTGGTTGTAGAGCTGGTGGAAAACGGAAAGAAGGTCACAGTGGGCAAAGATGACATCCAAAAAATGAACCCGCCCAAGTTCTCCAAGGTGGAAGACATGGCCGAGCTGACATGCCTCAATGAGGCTTCTGTGCTGCACAACCTGAGGGAGCGGTACTTCTCAGGCCTCATCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.036
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=WD(100=37.4),PF0006316=Myosin_head=PU(12.1=24.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCATCCGGTGTTCTCCT
R:
GCTCTACAACCACCTCATCGC
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]