RnoEX0057316 @ rn6
Exon Skipping
Gene
ENSRNOG00000003276 | Myo1d
Description
myosin ID [Source:RGD Symbol;Acc:621321]
Coordinates
chr10:68061256-68142864:-
Coord C1 exon
chr10:68142615-68142864
Coord A exon
chr10:68091162-68091242
Coord C2 exon
chr10:68061256-68061464
Length
81 bp
Sequences
Splice sites
3' ss Seq
GACATAGGACTGCTCCATAGGTG
3' ss Score
3.96
5' ss Seq
TAGGTAATT
5' ss Score
7.27
Exon sequences
Seq C1 exon
CACCCCTCAGCCACCGCGGGAGGAGCGGAAGCCGCCGGCCTCGCCCGTTCAGAGCTACGCGGGCCGGAGCTCTGAGGAGTGGCGGCCGTCTATCTCCGGCCCGACCCCGTCCGAGCACCCCCGCCCCAGCCCGAGTGCCCACCTGAGCCGGCGCCATGGCGGAGCAGGAGAGCCTTGAGTTTGGCAAGGCGGACTTCGTGCTGATGGACACCGTCTCCATGCCCGAGTTCATGGCCAACCTTAGGCTCAG
Seq A exon
GTGCTGGCTGCCAGGAGAGAACGAAGTTCAGAAGAAAAGCTACGAGGAATGACAGCACCCGTGAAAGTTCTTTCTTTTTAG
Seq C2 exon
ATTTGAGAAAGGACGCATCTATACATTCATTGGCGAGGTGGTCGTTTCCGTGAACCCATACAAGGTGCTGAACATCTATGGAAGGGACACAATTGAGCAGTACAAAGGTCGGGAGCTGTACGAGAGACCTCCTCATCTCTTCGCTATTGCTGACGCTGCTTACAAGGCTATGAAGAGGCGATCAAAAGACACCTGTATTATGATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003276_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.235 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(3.1=65.6)
A:
NO
C2:
PF0006316=Myosin_head=FE(10.4=100)
Main Inclusion Isoform:
ENSRNOT00000004609fB9243
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCGTGCTGATGGACACC
R:
TCCCGACCTTTGTACTGCTCA
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]