RnoEX0057357 @ rn6
Exon Skipping
Gene
ENSRNOG00000018478 | Myo3a
Description
myosin IIIA [Source:RGD Symbol;Acc:1560083]
Coordinates
chr17:88967842-88988112:+
Coord C1 exon
chr17:88967842-88967976
Coord A exon
chr17:88970258-88970395
Coord C2 exon
chr17:88988008-88988112
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTCACTCTTGCCTTCTACAGAGG
3' ss Score
8.91
5' ss Seq
TACGTAAGA
5' ss Score
6.14
Exon sequences
Seq C1 exon
GATATCGATGAAGAGATTGAAGCAGAGTATAACATCTTAAGAACACTTTCTGACCACCCGAATGTGGTCAGATTCTATGGGATTTACTTTAAGAAGGACAAGATAAATGGAGATAAGCTATGGCTGGTTCTTGAG
Seq A exon
AGGCCTTCCCTCCCTCATACTGTATGGCGTTAATCTGTTCTGGCAAGCACGAAATGAACCTCAGCGAGCTCTCCAGTCCGTAGCTTCCTCAGCCCTACTACATCATTTCTGACGTGCGGATGTGATGTGATTCCATAC
Seq C2 exon
CTGTGCAATGGAGGATCAGTGACTGATCTTGTGAAAGGATTTCTGAAGAGGGGAGAAAGGATGAGCGAGCCTATAATTGCATACATTTTACATGAAGCACTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018478-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.5=100)
A:
PF0006920=Pkinase=PD(4.7=36.4)
C2:
PF0006920=Pkinase=FE(12.7=100)
Main Inclusion Isoform:
ENSRNOT00000025053fB9250
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATGAAGAGATTGAAGCAGAGT
R:
TTAGTGCTTCATGTAAAATGTATGCA
Band lengths:
234-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]