RnoEX0057395 @ rn6
Exon Skipping
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82053455-82059934:+
Coord C1 exon
chr8:82053455-82053611
Coord A exon
chr8:82054600-82054685
Coord C2 exon
chr8:82059791-82059934
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTTTCCTCTGCCAAGTTT
3' ss Score
5.44
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGACGAACGAAATCAGTCCATCATTGTAAGTGGAGAGTCAGGTGCAGGGAAGACAGTCTCGGCTAAGTATGCCATGAGGTACTTCGCAACTGTAAGTGGCTCTGCCAGTGAGGCCAATGTTGAGGAAAAGGTCTTGGCCTCCAACCCCATCATGGAG
Seq A exon
TTTTCTTTATTACCGAAACACAGATGGAGCTAAAATTGACCTGATGCACCTTGGTACAAGTGGCTTTTGCAGTAATCTGCCCAGAG
Seq C2 exon
TCAATTGGAAATGCTAAAACAACCAGGAATGATAATAGCAGCCGGTTTGGGAAATATATTGAAATTGGTTTTGACAAGAGATATCGAATCATCGGTGCCAATATGAGAACTTACCTTTTAGAGAAATCCAGAGTGGTGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.108
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(38.2=100)
A:
PF0006316=Myosin_head=PD(0.7=9.1)
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Inclusion Isoform:
ENSRNOT00000082288fB9256
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAAGACAGTCTCGGCTA
R:
TTTCCCAAACCGGCTGCTATT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]