RnoEX0059019 @ rn6
Exon Skipping
Gene
ENSRNOG00000049452 | Nebl
Description
nebulette [Source:RGD Symbol;Acc:1308315]
Coordinates
chr17:84239205-84246966:-
Coord C1 exon
chr17:84246879-84246966
Coord A exon
chr17:84246708-84246779
Coord C2 exon
chr17:84239205-84239309
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGAATTTTCACATAGGTG
3' ss Score
8.18
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GGTAACGATGAAGGTGCCTGTATCCGGGGATGTGAAAGAGGAAACCGAAGAGGAAAATGTGGAGGAGGAAGAAAAGCCAGAAGACGAG
Seq A exon
GTGTTTCTGAAACCTGTCGTTGAAGACCTAAGCATGGAGCTGGCCAGAAAGTGCACCGAGCTCATTAGTGAC
Seq C2 exon
ATCCATTATAAAGAAGACTATAGAAAGTCTAAGGACAAGTGTACGTCTGTGACTGATACCCCTACGCTAAACCATGTGAAAAATATTAGTGCTTTTATTTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049452-'31-20,'31-19,32-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.751 A=0.111 C2=0.210
Domain overlap (PFAM):
C1:
NO
A:
PF0088013=Nebulin=PU(55.2=66.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAACGATGAAGGTGCCTGT
R:
TCACATGGTTTAGCGTAGGGG
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]