RnoEX0059020 @ rn6
Exon Skipping
Gene
ENSRNOG00000049452 | Nebl
Description
nebulette [Source:RGD Symbol;Acc:1308315]
Coordinates
chr17:84235499-84239309:-
Coord C1 exon
chr17:84239205-84239309
Coord A exon
chr17:84236499-84236609
Coord C2 exon
chr17:84235499-84235599
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTCCCCTCTTAGACA
3' ss Score
9.78
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
ATCCATTATAAAGAAGACTATAGAAAGTCTAAGGACAAGTGTACGTCTGTGACTGATACCCCTACGCTAAACCATGTGAAAAATATTAGTGCTTTTATTTCTGAG
Seq A exon
ACAAAATACAAAGGTACCATTAAAGCTGATCTTTCTAACTGTCTGTATAAGGACATGCCTGCTACCATTGACAGTGTCTTTGCAAGAGAAGTGTCCCAGCTTCAGAGTGAG
Seq C2 exon
AGATGGGAAGTAGCTTTCTCAAGGCCACACATCCGGGAAAAACAAGATCCAGAACACAAACATAGCTGATCTGCCTCCAACGTCTGAGTCCTCCACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049452-'35-22,'35-21,36-22
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4)
A:
PF0088013=Nebulin=PU(55.2=43.2)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAAAGTCTAAGGACAAGTGTACGT
R:
CTTGTGTGGAGGACTCAGACG
Band lengths:
186-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]