RnoEX0059300 @ rn6
Exon Skipping
Gene
ENSRNOG00000009377 | Nelfb
Description
negative elongation factor complex member B [Source:RGD Symbol;Acc:1307832]
Coordinates
chr3:2415754-2423280:-
Coord C1 exon
chr3:2423174-2423280
Coord A exon
chr3:2418025-2418039
Coord C2 exon
chr3:2415754-2415895
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTGCCTCCTTCACCTTCCAGCTG
3' ss Score
10.86
5' ss Seq
CAGGTGATA
5' ss Score
4.58
Exon sequences
Seq C1 exon
GTTTCTGCAGGAGCAGCGCATGGCTTGTGAGGTGGGACTGTACTATGTTCTACACATCACCAAGCAGAGAAACAAGAATGCTCTCCTGCGCCTGCTGCCTGGTCTTG
Seq A exon
CTGCTGCCACTGCAG
Seq C2 exon
TGGAAACCTTTGGTGACCTGGCCTTCAGTGACATCTTCCTCCACCTACTCACTGGGAGTCTGGCGCTGTTGGCTGATGAATTTGCCCTGGAGGACTTTTGCAGCAGCCTCTTTGATGGCTTCTTCCTCACTGCCTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009377-'15-26,'15-25,16-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(7.6=100)
A:
PF062098=COBRA1=FE(1.0=100)
C2:
PF062098=COBRA1=FE(9.9=100)
Main Inclusion Isoform:
ENSRNOT00000012978fB9558
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTGAGGTGGGACTGTAC
R:
CTGAAGGCCAGGTCACCAAAG
Band lengths:
113-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]