RnoEX0059431 @ rn6
Exon Skipping
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257455566-257460142:-
Coord C1 exon
chr2:257459921-257460142
Coord A exon
chr2:257458245-257458247
Coord C2 exon
chr2:257455566-257455751
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGGCATAGTTGTAAGATTAGGAT
3' ss Score
-4.77
5' ss Seq
GATGTCAAC
5' ss Score
-11.98
Exon sequences
Seq C1 exon
GAAGAAGAAGAAAATGAAAGCTTTGGGTTGAGTAGAGAATATGAAGAATTAATTAAATTAAAAAGGAGTGGTTCAATTCAAGCCAAAAATCTAAAAAGCAAGTTTGAAAAAATTGGACAGTTGTCTGAAAAAGAAGTACAGAAAAAGATAGAAGAAGAGAGAGCAAAAAGGAGAGCAATTGACCTTGAAATTAAAGAGCGAGAAGCAGAAAACTTCCATGAG
Seq A exon
GAT
Seq C2 exon
GATGATGATGTTGATGTAAAACCTGCAAAGAAGAGTGAGTCTCCCTTTACTCACAAAGTGAACATGAAAGCCAGATTTGAACAAATGGCTAAGGCAAGACAAGAAGAAGAGCAAAGGAGAATTGAAGAACAGAAGTTACTGCGGATGCAGTTTGAACAGAAAGAAATCGATGCAGCACTTCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.427 A=1.000 C2=0.803
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000083344fB9578
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAAGGAGAGCAATTGACCT
R:
GGGAGACTCACTCTTCTTTGCA
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]