RnoEX0059804 @ rn6
Exon Skipping
Gene
ENSRNOG00000000341 | Nid2
Description
nidogen 2 [Source:RGD Symbol;Acc:1311685]
Coordinates
chr15:4906314-4913173:-
Coord C1 exon
chr15:4913045-4913173
Coord A exon
chr15:4911939-4912082
Coord C2 exon
chr15:4906314-4906433
Length
144 bp
Sequences
Splice sites
3' ss Seq
AACTCTCACTTTCTTTTCAGTGA
3' ss Score
9.14
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATGTTAATGAGTGTGCCACTGGCTTCCATCGCTGCGGCCCCAATTCTGTGTGTGTCAACTTGGTGGGGAGCTACAGGTGCGAGTGCCGCAGCGGCTATGAATTCGCAGATGACCGGCACACTTGTGTCT
Seq A exon
TGATCGCCCCACCTCCCAACCCTTGCCTGGATGGCAGTCACACCTGTGCCCCTGAGGGGCAGGCCCGGTGCATTCACCATGGAGGCAGTTCGTTCAGCTGTGCCTGCCTGCCCGGCTTTGTTGGCACCGGGCACCAGTGTTCTG
Seq C2 exon
ATGTTGACGAATGTGCGGAAAACAGATGTCATGGGGCAGCCATCTGTTACAATACCCCCGGGTCCTTCTCCTGCCGGTGCCAGCCTGGGTACCACGGGGACGGGTTTCACTGCGCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000341-'23-21,'23-18,24-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5)
A:
PF129472=EGF_3=WD(100=79.6),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=92.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAATGAGTGTGCCACTGGC
R:
CAGAGGCGCAGTGAAACCC
Band lengths:
247-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]