RnoEX0060184 @ rn6
Exon Skipping
Gene
ENSRNOG00000027502 | Nmi
Description
N-myc (and STAT) interactor [Source:RGD Symbol;Acc:1311721]
Coordinates
chr3:37472580-37480984:-
Coord C1 exon
chr3:37480966-37480984
Coord A exon
chr3:37472737-37472938
Coord C2 exon
chr3:37472580-37472655
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTTTCTCTGACAAGCAT
3' ss Score
5.58
5' ss Seq
GGGGTAAAG
5' ss Score
3.53
Exon sequences
Seq C1 exon
GCGCTGCGCGGCAGAGAGG
Seq A exon
CATACTGAGACTGGGCTAACACCGGCGTCACAGCTGACATCCTGTGTTAGCAGTGCCTTCACCGAGCTCCCTCCTATACAATTAGAGATGTGAGTTTCTTCAAGCTACAGATGACATTTGGCTGGAAATCACAGGGCAATCCAGACTCTGACAATAGGGAAAAATTACAAAGCAAAGAGGACAAAGTTTCTTCCATAAAGGG
Seq C2 exon
GGCGTCATGGATAACAACGTAAGGCAAGCTTATGAAGAGTGCTCACCAGAGAAGGACATCATGAGAGGCGAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027502_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]