RnoEX0060195 @ rn6
Exon Skipping
Gene
ENSRNOG00000027697 | Nmnat2
Description
nicotinamide nucleotide adenylyltransferase 2 [Source:RGD Symbol;Acc:1307331]
Coordinates
chr13:70532314-70556275:+
Coord C1 exon
chr13:70532314-70532390
Coord A exon
chr13:70546454-70546512
Coord C2 exon
chr13:70556174-70556275
Length
59 bp
Sequences
Splice sites
3' ss Seq
CCGTTTCTTTCCCCACCTAGAAG
3' ss Score
8.24
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AGCTGCGCATCTTGCTGCTGTGCGGTAGTGACCTGCTGGAGTCCTTCTGCATCCCAGGACTCTGGAATGAGGCAGAT
Seq A exon
AAGTGCCTACAGCTGCATGCTCTAGGGGGCGACAGAGAGCAATGAACTGAGGATACCTG
Seq C2 exon
ATGGAAGTGATTGTTGGGGATTTTGGGATTGTGGTGGTGCCCCGGGATGCAGCGGACACAGACCGAATCATGAATCACTCCTCAATACTCCGCAAATACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027697_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146721=CTP_transf_2=FE(11.7=100)
A:
PF0146721=CTP_transf_2=PD(3.3=46.7)
C2:
PF0146721=CTP_transf_2=FE(12.5=100)
Main Inclusion Isoform:
ENSRNOT00000038183fB9719
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTTGCTGCTGTGCGGTAG
R:
CATGATTCGGTCTGTGTCCGC
Band lengths:
142-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]