RnoEX0060873 @ rn6
Exon Skipping
Gene
ENSRNOG00000005600 | Nr4a2
Description
nuclear receptor subfamily 4, group A, member 2 [Source:RGD Symbol;Acc:3202]
Coordinates
chr3:43115070-43116819:-
Coord C1 exon
chr3:43115954-43116819
Coord A exon
chr3:43115425-43115438
Coord C2 exon
chr3:43115070-43115199
Length
14 bp
Sequences
Splice sites
3' ss Seq
TCCTGGCATATAAAACACAGCAA
3' ss Score
-0.16
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
CCATGCCTTGTGTTCAGGCGCAGTATGGGTCCTCGCCTCAAGGAGCCAGCCCCGCTTCTCAGAGCTACAGTTACCACTCTTCGGGAGAATACAGCTCCGATTTCTTAACTCCAGAGTTTGTCAAGTTTAGCATGGACCTCACCAACACTGAAATTACTGCCACCACTTCTCTCCCCAGCTTCAGTACCTTTATGGACAACTACAGCACAGGCTACGACGTCAAGCCACCTTGCTTGTACCAAATGCCCCTGTCCGGACAGCAGTCCTCCATTAAGGTAGAAGACATTCAGATGCACAACTACCAGCAACACAGCCACCTGCCCCCTCAGTCCGAGGAGATGATGCCACACAGCGGGTCGGTTTACTACAAGCCCTCTTCGCCCCCGACACCCAGCACCCCGGGCTTCCAGGTGCAGCATAGCCCGATGTGGGACGATCCGGGCTCCCTTCACAACTTCCACCAGAACTACGTGGCCACTACGCATATGATCGAGCAGAGGAAGACACCTGTCTCCCGCCTTTCACTCTTCTCCTTTAAGCAGTCGCCCCCGGGCACTCCTGTGTCTAGCTGCCAGATGCGCTTTGACGGGCCTCTGCACGTCCCCATGAACCCGGAGCCCGCGGGCAGCCACCACGTAGTGGATGGGCAGACCTTCGCCGTGCCCAATCCCATTCGCAAGCCGGCATCCATGGGCTTCCCGGGCCTGCAGATCGGCCACGCGTCGCAGTTGCTTGACACGCAGGTGCCCTCGCCGCCGTCCCGGGGCTCTCCCTCCAATGAGGGTCTGTGCGCTGTTTGCGGTGACAACGCGGCCTGTCAGCATTACGGTGTTCGCACTTGTGAGGGCTGCAAAGGTTTCTTTAAG
Seq A exon
CAAGGAGCGGCAAG
Seq C2 exon
CGCACGGTGCAAAAAAACGCGAAATATGTGTGTTTAGCAAATAAAAATTGCCCAGTGGATAAGCGCCGCCGAAATCGTTGTCAGTACTGTCGGTTTCAGAAGTGCCTGGCTGTTGGGATGGTTAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005600-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(38.6=9.4)
A:
PF0010513=zf-C4=FE(9.1=100)
C2:
PF0010513=zf-C4=PD(58.6=93.2)
Main Inclusion Isoform:
ENSRNOT00000041394fB9833
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGAGGGCTGCAAAGGTTT
R:
GCGCTTATCCACTGGGCAATT
Band lengths:
94-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]