RnoEX0061636 @ rn6
Exon Skipping
Gene
ENSRNOG00000025185 | Nup188
Description
nucleoporin 188 [Source:RGD Symbol;Acc:1306022]
Coordinates
chr3:8878635-8881288:+
Coord C1 exon
chr3:8878635-8878724
Coord A exon
chr3:8879573-8879713
Coord C2 exon
chr3:8881223-8881288
Length
141 bp
Sequences
Splice sites
3' ss Seq
ACTTACATCCTATTTAGCAGATG
3' ss Score
4.69
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TGCACCACGAGTACCGCCTGCATGTGTGTCTACGGTCTTCTCTCCTTTGCTCTCACCTCACTGGAGCTGCACACACTGGGCAACCAGCAG
Seq A exon
ATGGAGACATGTGCATGGGTGACTGACATCCTGGTTGGCAAGCTAAGACATGAATGTCAGGCAAGGCAAGTCCCATCCTGCTTGACAAGGCATGAATGTTAGACAAGGCAGCAGTTGACTACCCCAACCAATGGGAGCAGG
Seq C2 exon
GATGTAATTGACACAGCATGTGAAGTCCTGGCAGACCCTTCTCTTCCAGAGCTTTTCTGGGGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025185-'14-14,'14-13,15-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(14.9=100)
A:
PF104874=Nup188=PD(2.1=11.8)
C2:
PF104874=Nup188=FE(2.9=100)
Main Inclusion Isoform:
ENSRNOT00000030996fB9967
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACGAGTACCGCCTG
R:
CAGAAAAGCTCTGGAAGAGAAGGG
Band lengths:
147-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]