RnoEX0061651 @ rn6
Exon Skipping
Gene
ENSRNOG00000025185 | Nup188
Description
nucleoporin 188 [Source:RGD Symbol;Acc:1306022]
Coordinates
chr3:8898486-8901533:+
Coord C1 exon
chr3:8898486-8898681
Coord A exon
chr3:8899007-8899041
Coord C2 exon
chr3:8901456-8901533
Length
35 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCCGTTGGTTCTAGGAA
3' ss Score
11.09
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GGGTTCATTGGACCAGTCATTAAAAGATACACTCAAGAAGTTTTCCAGTGAGAAACGCTTTGCCTACTGGTCGGGGTACGTCAAGTCTCTGGCAGTTTACATGGCTGAGACAGAGGGCAACAGCTGCACGTCCTTGCTAGAGTATCAGATGCTGGTGTCCGCCTGGAGGACGCTTCTCATCGTTGCTACCAGTCAC
Seq A exon
GAAAAGGACGAAGGCCATTGTCTCTTCACTGTATA
Seq C2 exon
GCAGACATCATGAACTTGACTGACGTGGCAGTGCGGCGCCAGCTTTTTCTTGATGTGCTTGACGGGACCAAAGCATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025185_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF118943=DUF3414=PD(2.2=16.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000030996fB9969
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCAGATGCTGGTGTCCGC
R:
TTTGGTCCCGTCAAGCACATC
Band lengths:
127-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]