RnoEX0061735 @ rn6
Exon Skipping
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11028764-11036019:+
Coord C1 exon
chr3:11028764-11028863
Coord A exon
chr3:11035001-11035051
Coord C2 exon
chr3:11035944-11036019
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTCAACCTAATCAAATCTAGGAA
3' ss Score
6.85
5' ss Seq
TAAGTAAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
CTGTGAGCACTCTGACCGAATCCACTTTGAAGAATGTCCCTCAAGTGGTGAATGTACAGGAACTGAAGAGTAACCCCTCACCCCCTTCTGCGGCCATGGG
Seq A exon
GAAGTTTACATGTTGTCCCACAGAAGATTTGGATGGACCATTAAGGACTAA
Seq C2 exon
TTCTTCTGGGCCGCACTCAGCAGCCAAAGCCCCCCATGCAGTGTTAACCCCAGTGGCTGCCAGCCAAGCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.838
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000037164fB9985
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTCTGACCGAATCCACT
R:
CTGGGGTTAACACTGCATGGG
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]