RnoEX0061739 @ rn6
Exon Skipping
Gene
ENSRNOG00000047244 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:9228531-9230827:-
Coord C1 exon
chr3:9230757-9230827
Coord A exon
chr3:9230383-9230497
Coord C2 exon
chr3:9228531-9228594
Length
115 bp
Sequences
Splice sites
3' ss Seq
CCCTCATTATGTCCTTCCAGTGA
3' ss Score
8.41
5' ss Seq
TAGGTACTA
5' ss Score
4.64
Exon sequences
Seq C1 exon
TATGCTGGAGCCCCAAAGGAAAGCAGCTGGCCGTGGGAAAGCAGAATGGAACTGTGGTCCAGTATCTTCCT
Seq A exon
TGATGCCACAGTTGTGAGTGGCTCCATCTCCTCCCTTTCATGGATCTCATCCAGTTCACCCATTGGACGCGCATTGTTTCTGTTTTCCTTTAAAGTGAAATGTGGCCTACGCTAG
Seq C2 exon
ACATTGCAGGAAAAAAAGGTCATTCCATGTCCTCCGTTTTATGAGGCAGACCACCCTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047244-'11-10,'11-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(58.3=87.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCTGGAGCCCCAAAGGAA
R:
ACAGGGTGGTCTGCCTCATAA
Band lengths:
130-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]