RnoEX0062433 @ rn6
Exon Skipping
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83961840-83967399:-
Coord C1 exon
chr14:83967143-83967399
Coord A exon
chr14:83962669-83962727
Coord C2 exon
chr14:83961840-83961964
Length
59 bp
Sequences
Splice sites
3' ss Seq
CGTCCTTCTTCTGGGTACAGCGA
3' ss Score
6.77
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATGACTCTGGGGACGACGACGAAGAGCCTGCTGCCCCTGCTGACAACAGTGATCTCCACCACACTCTTAAGACCCTCTCACTGAAGCTAGACGACCTCGGCACGTGCAATGACCTCATTGCCAAGCATGGCGCTGCCCTCCAGCGCTCCCTGAATGAGCTGGACAGTCTTAAGATCCCATCAGAGAGTGGGGAGAAGCTGAAGGTTGTGAACGAGCGGGCCACCCTCTTCCGCATCACATCAAATGCTATGATCAAC
Seq A exon
CGAACAGCGGTTTCCAGGTCAGAAACTGTGTATCCCATGGACACCTGCTAAGAAGGGAG
Seq C2 exon
CTCAGCACTCCAGGGCAGCAGAGCCAGGCCGGCTCCTGTCTCTTCACGGCGTGGCCAGCATGAGGCCTGGAGAAGGCCAGTGGCAGCTGAGAAGACCCTGGGAGCTGGGGGTGGAAAGCAGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645-'25-8,'25-7,26-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=0.375 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000065501fB10108
Main Skipping Isoform:
ENSRNOT00000065501fB10111
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTCTTCCGCATCACATC
R:
CTCCCAGGGTCTTCTCAGCTG
Band lengths:
141-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]