RnoEX0062434 @ rn6
Exon Skipping
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:84064166-84074610:-
Coord C1 exon
chr14:84074510-84074610
Coord A exon
chr14:84072179-84072217
Coord C2 exon
chr14:84064166-84064374
Length
39 bp
Sequences
Splice sites
3' ss Seq
CACATATCTCCTTTTTATAGGTG
3' ss Score
10.22
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGATCAAGATAAAGAACTGGTGGAACCTTCTCCAGCACTGTGTCTGCCTGCGTGCTGCCATGCTTCCTGCTGTGATGGTAATGGACTGAACCTCTGAAACT
Seq A exon
GTGCATTCAGGATGGCATTACTGAGTCACCACTTGGCAG
Seq C2 exon
AAACCAGGGTGAAATGGCCCACACCTGCCGTGGAACCATCAACCTGGCCTCCGCGCACTTCGAAACAGAGGACTCTTGTGGAATCTTGCTATGCAACGGGGCAAGGACCTACCACCTCAAGGCCAGCTCAGAGGTGGACCGTCAGCAATGGATCACCGTTCTGGAGTTGGCCAAGGCCAAGGCTATCCGTGTGATGAACACTCCAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645-'3-4,'3-3,4-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.286 C2=0.077
Domain overlap (PFAM):
C1:
NA
A:
PF0016924=PH=FE(12.5=100)
C2:
PF154091=PH_8=PD(66.7=81.7)
Main Inclusion Isoform:
ENSRNOT00000065501fB10109
Main Skipping Isoform:
ENSRNOT00000065501fB10111
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTTCCTGCTGTGATGGT
R:
AGTCCTCTGTTTCGAAGTGCG
Band lengths:
117-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]