RnoEX0062507 @ rn6
Exon Skipping
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80040805-80041809:-
Coord C1 exon
chr4:80041731-80041809
Coord A exon
chr4:80041518-80041558
Coord C2 exon
chr4:80040805-80040949
Length
41 bp
Sequences
Splice sites
3' ss Seq
TCTAGTGATTTCTTTAACAGGAT
3' ss Score
7.57
5' ss Seq
GAGGTGATC
5' ss Score
3.49
Exon sequences
Seq C1 exon
ACGTGAGATGGAAAAACAAATTCTGGGGTAAATCCATGGAAATTGTCCCGATTGGTACTACCCATGTGACTCTGCCTGC
Seq A exon
GATGGAAATACCCACTTCTGACAGCCGCTCTCTAAACTGAG
Seq C2 exon
GTTTGGAGATCACTTCGAGTGGAACAAAGTGACCTCCTGCATCCACAACATCTTAAGCGGACAGCGCTGGATCGAGCACTATGGTGAAATTGTCATCAAGAACCTGAGAGACGACTCCTGCCACTGCAAAGTGAACTTCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(16.5=100)
A:
PF0123713=Oxysterol_BP=PD(5.1=57.1)
C2:
PF0123713=Oxysterol_BP=FE(13.9=100)
Main Inclusion Isoform:
ENSRNOT00000013828fB10125
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACCCATGTGACTCTGCCT
R:
GCAGGAGTCGTCTCTCAGGTT
Band lengths:
144-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]