RnoEX0062528 @ rn6
Exon Skipping
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63353178-63379292:+
Coord C1 exon
chr3:63353178-63353321
Coord A exon
chr3:63369947-63370183
Coord C2 exon
chr3:63379037-63379292
Length
237 bp
Sequences
Splice sites
3' ss Seq
CTTCCGATGTCCTTACCTAGGCC
3' ss Score
7.96
5' ss Seq
TAAGTGTGC
5' ss Score
-1.63
Exon sequences
Seq C1 exon
ACTGGGAAGCCAATAAAAGAAGACAGTTAAGGCACCAGCAGTGCCAGCGGGGCTGACAGACTGCAGCAAAAGAACAGAGGCCAGGCCACTGAGAAGCAGTTGTAATGGTACAGCCAAGCTAGAAGACTCTGACACGAGGCAAAG
Seq A exon
GCCTCCTGTAGAAGGTGTGGCTGAGATTAAAGGTGTGTGCCTCATGCCTGGATCTGGAACTTGCTCTGTCCCAGGCTGGCCTGGAATTCAGAGATTGCTTGCCTCAGTCTCATGAGACTAAAGGCATCTATTACCTTGCCTAGACCTGAGGTTTTCATGGTCACATGCCTCAAGATCTAGATCAACAGCATGTCCCAGGTCAGAAGCGTGTGTCTTGGAGCCTCAGGATCATCATAA
Seq C2 exon
GAAGTTTGGACACATCATCAGTGGCCAGAGCTTTCCGAGTCTCGTCCGATCCGAGGGAGATGGACTGAAGCCACAGACTGTCTGGTTCTTTGTCTGGGAGTTGGAAGGAGGATTGGGATGGTCTCACGTGCACATCCCTAGACTAATTGCAACCATGAGTTCAGACGAGAAGGGCATATCCCCTGCTCATAAAACATCCACTCCGACCCACAGAAGTGCCTTGTCGTCAACATCTTCTCAGAGGGAAAGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTTAAGGCACCAGCAGT
R:
TGCCCTTCTCGTCTGAACTCA
Band lengths:
299-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]