RnoEX0062670 @ rn6
Exon Skipping
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51930243-51933969:+
Coord C1 exon
chr7:51930243-51930288
Coord A exon
chr7:51931557-51931670
Coord C2 exon
chr7:51933890-51933969
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTGTTGCTTTCTAGGTC
3' ss Score
13.11
5' ss Seq
TGAGTTCAG
5' ss Score
-21.42
Exon sequences
Seq C1 exon
AATGAAGGCATTGTAAAGTTTTATAATGAAGGCTGTTGCAAGATCT
Seq A exon
GTCTACTGTAACACATAATCTCACAAATCAAATCACATAATAAACATTCGGAATGTATTGTCTCACAGATCTGGAATTCCCAAACTGAGGTGTTGATGAGCCGCTCTCTAATGA
Seq C2 exon
GCAAACGAGAAGAAAGAATATGCCAGAAACTGATCATTAAATCGATCATAAAGAAACAGGACTGTGTAAGCCAGAGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316-'64-70,'64-69,65-70
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000043774fB10158
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTTATAATGAAGGCTGTTGCA
R:
GCTCTGGCTTACACAGTCCTG
Band lengths:
107-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]