RnoEX0062759 @ rn6
Exon Skipping
Gene
ENSRNOG00000019760 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:RGD Symbol;Acc:1311534]
Coordinates
chr16:8231482-8233579:+
Coord C1 exon
chr16:8231482-8231724
Coord A exon
chr16:8232412-8232626
Coord C2 exon
chr16:8233471-8233579
Length
215 bp
Sequences
Splice sites
3' ss Seq
CCTGGAAGTTCTGGTTTCAGTAT
3' ss Score
1.99
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
TGCACACTTGACTCAGAAGTGGCTCTCAGAGTAGGTGGAGAGTTCTTCTTTGACCCTCAGCCCACAGATGCCCCTCGAAACCTCGTCTTGATTGCTGGAGGGGTTGGGATTAACCCCCTGCTTTCTATCCTGCGCCACTCGGCAGATCTCCACCGGGACCACAAAGAAAAAAGGAGAGGCTATGATATAGGAACAATAAAACTGTTCTACAGCGCAAAGAACACCAGTGAACTCCTGTTTAAG
Seq A exon
TATAGTTCATGACCATCGTGGCGGCAGGCAGGCAGGCAGCACGGTGCTGAAGGCTTCATCTTGACACAAGCAGGAAGCAGAGAGGGTAACTGCAGTGGGATTTGTCTTTTGAAACCTCAAAGCCCGCCCCGATGACACACCTCTAACAAGGCCACACCTCCCAATCCTTCCCAAACAGTTCCACCAACTGGGATCAAGTAGTCAAGCATGAGCCG
Seq C2 exon
AAAAATATCCTCGACTTAGTACATGAGTTTCCTGAGAAGATTGCCTGCAGTTTTCACGTTACAAAACAGACGACCCAAATCAGTTCTGAACTTAAGCCTTATGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019760_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=PD(11.0=12.3),PF080307=NAD_binding_6=WD(100=70.4)
A:
NO
C2:
PF0017516=NAD_binding_1=FE(29.8=100)
Main Inclusion Isoform:
ENSRNOT00000026751fB10175
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCTCTCAGAGTAGGTGG
R:
TGGGTCGTCTGTTTTGTAACGT
Band lengths:
303-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]