RnoEX0062784 @ rn6
Exon Skipping
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:128004939-128009951:-
Coord C1 exon
chr8:128009588-128009951
Coord A exon
chr8:128009164-128009301
Coord C2 exon
chr8:128004939-128005039
Length
138 bp
Sequences
Splice sites
3' ss Seq
TACATGGCACTGGTTTGCAGGGG
3' ss Score
4.35
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
AGGGCGGGACGGAGGGGCAGGGCCGGGAAGAAGCTCTCTTCGCGGTGCCGCGGAGGCTGAGGCCGGCTCGTGGGCTGGGCCGGGGACTGCGGGACACGGAGCCGCAGGAGGCGAGTTCGGCCGCAGCCGCGCGTCCCCGCCTCGGGCCCGCGCTTGACCCGCGCGCCCCGGCGTTGTGCGCCCCAAGGCTGGGCCAAGCGGCGGGTTGGGGGCGGCTGGGCGTGGGGAGGCGCGCGGCGAGGTGACCCGAGAGCCCCAAGCGTGAGAAGCACGGAGCCAGGCGCTGCAGCCGTCATGTCCGAGGACTCGAGCGCCCTGCCCTGGTCCATCAACAGGGACGACTACGAGCTGCAGGAGGTGATCG
Seq A exon
GGGTGAGGCTGAGGGAAGCTGCAGGTACCCGGTGCTGAACAGGTTAGACTCGCCTCTGGCTCCTTACAACTCACTTCTCTGGTCAAGAAGGCAGACGTCAACTGCAGAGAAAGAATGGAAAAGCGGTAACGGGTCTCG
Seq C2 exon
AGCCCCAGGCTCAATTCCCGGAACCCGTGTTGGATGGCTCACAGCTGCCTGTAACTTCAGGTACAGGGGATTTGACTCCTTACTCTGGCCTCTGTGAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136-'1-2,'1-1,2-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(14.9=29.2)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000018056fB10187
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGACCCGAGAGCCC
R:
ACACTCACAGAGGCCAGAGTA
Band lengths:
227-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]