RnoEX0062795 @ rn6
Exon Skipping
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:127980931-127991861:-
Coord C1 exon
chr8:127991749-127991861
Coord A exon
chr8:127986388-127986562
Coord C2 exon
chr8:127980931-127981039
Length
175 bp
Sequences
Splice sites
3' ss Seq
CACTTCTTTAATCCCAGCAGCAC
3' ss Score
3.95
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GGAGTGGAGCAACTGCTGTGGTCCAAGCAGCTTACTGTGCCCCCAAAAAGGAGAGAGTGGCAATCAAACGGATAAACCTGGAGAAGTGTCAGACGAGCATGGATGAGCTCCTG
Seq A exon
CACTCAGGAGGCAAAGGGAGGCAGATGTCTGAGTTCTAGCTCAGCCTGGCCTACAGAGCAAGTTCCAGGACAGCAGGGCTACACAGAGAAACTCGTCTCAAAACAGTAACTACAACAACAGCAGCAACAACAAACAAACCAAGAATGGAGGCCAGGACAAGTTTAAAAGCTAGAG
Seq C2 exon
AAAGAAATCCAAGCTATGAGTCAATGCCATCATCCTAACATTGTGTCTTACTACACATCCTTTGTGGTAAAAGATGAGCTGTGGCTGGTCATGAAGCTGCTAAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.417 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.5=100)
A:
PF0006920=Pkinase=PD(2.1=7.7)
C2:
PF0006920=Pkinase=FE(13.1=100)
Main Inclusion Isoform:
ENSRNOT00000018056fB10190
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGCTGTGGTCCAAGCAG
R:
CCACTTAGCAGCTTCATGACCA
Band lengths:
211-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]