RnoEX0063685 @ rn6
Exon Skipping
Gene
ENSRNOG00000010736 | Pbx4
Description
PBX homeobox 4 [Source:RGD Symbol;Acc:1305100]
Coordinates
chr16:21316099-21324299:-
Coord C1 exon
chr16:21324169-21324299
Coord A exon
chr16:21316905-21316998
Coord C2 exon
chr16:21316099-21316172
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTAATTTTGTGTGGGTGCAGATG
3' ss Score
7.62
5' ss Seq
CCAGTGGAG
5' ss Score
-11.98
Exon sequences
Seq C1 exon
CTCCTAGACGCCACCCCGAGTTCTCTGCTGTGGCTCTTTCGAAGCGAGGCACTGGGCTTTTCATCAGCTGCATGAACTGTGAGATAACATGGCAGCCACATTTTGAGTCACAGGTTCTGCTTTGAGTCAAG
Seq A exon
ATGAGTGGCTGGTCCTGTGGAGATCAGGGACAACTCAGTAGTTCTGCCACTGTGTGTGAGGTTCCGGACTGAGCTCGGCAGGCACTCTTACCCA
Seq C2 exon
AAAGCATGCCCTGAACTGCCATCGGATGAAGTCTGCTCTCTTCAGTGTGCTCAGCGAGATCAAGGGGAAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010736-'2-4,'2-3,3-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.269
Domain overlap (PFAM):
C1:
NA
A:
PF037928=PBC=PD(0.1=0.0)
C2:
PF037928=PBC=FE(12.8=100),PF070286=DUF1319=FE(14.9=100)
Main Inclusion Isoform:
ENSRNOT00000014265fB10344
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTGTGGCTCTTTCGAA
R:
CTCGCTGAGCACACTGAAGAG
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]