RnoEX0065926 @ rn6
Exon Skipping
Gene
ENSRNOG00000020479 | Pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:RGD Symbol;Acc:1310389]
Coordinates
chr1:185210922-185234547:+
Coord C1 exon
chr1:185210922-185211067
Coord A exon
chr1:185211689-185211770
Coord C2 exon
chr1:185233419-185234547
Length
82 bp
Sequences
Splice sites
3' ss Seq
TACATTTTTATTTTAGCCAGTGG
3' ss Score
-0.51
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTACAGTGCTCGGCTGGCCGCGGAGTCAGTCGAAGCTCTCCTCAGCGGCCGGCTGAGCCAGCTGAGGCGGGAGAAAAACATGGCTCGGACCTTTGAGGGCGCGAAGGCTTGGGTTGCGGTGGAGACTGGGGCTCCCGTAGCGTGAG
Seq A exon
TGGGTGTTTTGAATTGAGTGACACGAAGGAAGCATCCCTGTTTGAACAAGATTACTTAAGAAGTATTCCCAAATCTTACCAG
Seq C2 exon
GTCCTGGTATTTTGGAAGCCACAAGAAAAAAGATTAAGAGATTTGGTCTCTTGTGGACATGGCTCAGATTTCCAACAACAGTGAATTTAAACAGTGTTCATCTTCACATCCAGAACCAATAAGAACCAAAGATGTGGACAAAGCAGAAGCATTACAGATGGAAGCAGAAGCCTTAGCAAAATTGCAGAAGGATAGACACATGACTGACAGTCCAAGAGGCTTTGAGCTGTCTAACAGCACTAGACAAAGAACACAGGGTTTTAACAAACAGGATTATGATCTCATGGTGTTTCCTGAGTCGGATTCCCAAAAAAGAGCATTAGATATTGACGTAGAAAAGCTTACCCAAGCTGAACTTGAAAAGATATTGCTGGATGACAATTTTGAAACTAGAAAAACTCCTGCATCGCCAGTTACTCCTGTTCTGAGCCCTTCATTTTCAGCACAGCTATATCTTAGACCTGCTGTTCAAAGAAGCCAGTGGCCCCCTGGATTATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020479-'2-2,'2-1,3-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.342
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGAAGCTCTCCTCAGCG
R:
AGCCATGTCCACAAGAGACCA
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]