RnoEX0065934 @ rn6
Exon Skipping
Gene
ENSRNOG00000020479 | Pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:RGD Symbol;Acc:1310389]
Coordinates
chr1:185307446-185310421:+
Coord C1 exon
chr1:185307446-185307538
Coord A exon
chr1:185308362-185308431
Coord C2 exon
chr1:185310292-185310421
Length
70 bp
Sequences
Splice sites
3' ss Seq
ACCTGGATTTTGGTTTTTAGAAA
3' ss Score
7.75
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
TCATGCTCATTCTTCAGTTCGAATGCCATGCCTCTGAAAGTCACAATGGTGAATGCTGATCCTCTGGGAGAAGAAATTAATGTCATGTTTAAG
Seq A exon
AAACAGAAATTATCTATGTGAAGCAGAAGGACTGGAGTATTAGAGAAGAATCTATTACCTGTTGAAATTT
Seq C2 exon
GTTGGTGAAGATCTTCGGCAAGATATGTTAGCTTTACAGATGATAAAGATTATGGATAAGATCTGGCTTAAAGAGGGCCTGGATCTGAGGATGGTGATATTCAAATGCCTGTCGACTGGCCGAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020479_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PU(2.8=19.4)
A:
NO
C2:
PF0045422=PI3_PI4_kinase=FE(19.9=100)
Main Inclusion Isoform:
ENSRNOT00000055120fB10710
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGAATGCCATGCCTCTGA
R:
CCTCAGATCCAGGCCCTCTTT
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]