RnoEX0065944 @ rn6
Exon Skipping
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49890283-49891726:+
Coord C1 exon
chr13:49890283-49890425
Coord A exon
chr13:49890809-49890908
Coord C2 exon
chr13:49891538-49891726
Length
100 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCACTTTCCAAAAAGGAT
3' ss Score
6.92
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
ATTGACTTCCCCACCTCGGCCTTTGACATCAAGTTCACCAGCCCCCCTGGAGACAAGTTCAGCCCCCGCTATGAGTTTGGCAGTCTCCGGGAGGAGGACCAGCGCAAACTTAAAGACATTACGCAGAAGGAGTCCCTTTACTG
Seq A exon
GATCAGGTGTCTTGGTAAGCCGGCAGCTCCCAGGAGTGAAGGAGTCCAGGCTGATCCCATCCTCCGAGCTGCTGTGTCCACCAGGACTGGAGAGGGAGGG
Seq C2 exon
GCTCTCTGATGCCGACAAGAAGCAACTGTGGGAGAAGCGCTATTACTGCCACACTGAGGTGAGCTCGCTCCCCTTGGTGCTCGCCAGTGCACCCAGCTGGGAGTGGGCTTGCCTGCCGGACATCTATGCTCTCCTGCAACAGTGGACTCACATGAACCACCAGGATGCCCTGGGACTCCTGCATGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938-'27-24,'27-23,28-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.353 C2=0.005
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PD(3.5=10.4),PF0061315=PI3Ka=PU(11.5=43.8)
A:
NO
C2:
PF0061315=PI3Ka=FE(34.4=100)
Main Inclusion Isoform:
ENSRNOT00000042125fB10711
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCAAGTTCACCAGCCCC
R:
CATAGATGTCCGGCAGGCAAG
Band lengths:
247-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]