RnoEX0065950 @ rn6
Exon Skipping
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49904889-49905849:+
Coord C1 exon
chr13:49904889-49905006
Coord A exon
chr13:49905437-49905567
Coord C2 exon
chr13:49905768-49905849
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTTTTGGTTTTTGGAGACAGGGT
3' ss Score
0.13
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
CTTCCCTAGTCGGTTTGTGATTGGCCGCTCCCGGGGAGAGGCAGTGGCTGAGAGGCGGAAGGAGGAGCTAAATGGCTACATCTGGCACTTGATTCATGCAGCCCCTGAAGTGGCTGAG
Seq A exon
GGTTTCTCTGGGTAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGCCTGGCCTCCATCTACCTGCCTCTGCTTCCTGGGTGCTGGGATTACAGGCGTGTTCTACCACAGACCTGCCCTGTAGCTCAG
Seq C2 exon
TGTGACCTGGTATATACTTTCTTCCATCCTCTGCCCCGCGATGAGAAGACTTCAGGCCCTAGCCCAGCCCCGAAGTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938-'45-42,'45-41,46-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
PF0078719=PX=FE(34.5=100)
A:
NO
C2:
PF0078719=PX=PD(8.8=35.7)
Main Inclusion Isoform:
ENSRNOT00000042125fB10714
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCGGTTTGTGATTGGCCG
R:
CTGATGACTTCGGGGCTGGG
Band lengths:
194-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]