RnoEX0066486 @ rn6
Exon Skipping
Gene
ENSRNOG00000005504 | Pkp4
Description
plakophilin 4 [Source:RGD Symbol;Acc:1307840]
Coordinates
chr3:45374952-45381809:+
Coord C1 exon
chr3:45374952-45375171
Coord A exon
chr3:45377560-45377607
Coord C2 exon
chr3:45381677-45381809
Length
48 bp
Sequences
Splice sites
3' ss Seq
TGTGAATTTTTTTCTTTCAGTAC
3' ss Score
8.42
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
TAGGCATTGGGAATCTACAAAGGACTTCCAGCCAGAGAAGCACCCTTACATACCAAAGAAATAACTATGCTCTGAACACAGCAGCTACCTATGCGGAGCCCTACAGGCCTGTACAGTACCGAGTCCAAGAGTGCAGCTATAACCGGCTGCCACACACAGGGCCGGCTGACGATGGTGCCACGAGATCCCCATCAATAGACAGCATTCAGAAGGACCCCAG
Seq A exon
TACTTTTAAAGGTGTTATTCATTGTCTTCAGACATCTGTTGTGTTTTG
Seq C2 exon
GGAGTTTGCCTGGCGTGACCCTGAGCTGCCAGAAGTCATTCACATGCTGCAACACCAGTTCCCGTCCGTGCAGGCGAATGCCGCGGCCTACCTGCAGCACCTGTGCTTTGGCGACAACAAAGTGAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005504_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0051418=Arm=PU(14.6=13.3)
Main Inclusion Isoform:
ENSRNOT00000059246fB10807


Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATAACCGGCTGCCACACAC
R:
ACTGGTGTTGCAGCATGTGAA
Band lengths:
143-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]