RnoEX0066645 @ rn6
Exon Skipping
Gene
ENSRNOG00000019018 | Plat
Description
plasminogen activator, tissue type [Source:RGD Symbol;Acc:3342]
Coordinates
chr16:74113029-74122889:-
Coord C1 exon
chr16:74122793-74122889
Coord A exon
chr16:74118950-74119056
Coord C2 exon
chr16:74113029-74113116
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTGGTGTGGTGCCGTTCCAGAAC
3' ss Score
6.66
5' ss Seq
AGGGCGAGC
5' ss Score
-0.01
Exon sequences
Seq C1 exon
CTTAAAATTGGCTTGAGCTGTCCAGGGAGACAGAGCCTGCGGGGGAGCTAATCAGGAGAAGCCCCTGCGAGAGTGGGAAAGAAGCAAGCAAGGCACG
Seq A exon
AACGTTCCAGAACGATCCAGAAAGTTCCAGAAAGGCTGGTGAATTTCAGATACATTCATGGACTGACCTAGCGAACACTTCAGATCGTGACCTCCTGATTCAAGAGG
Seq C2 exon
GGACACGGAAGAAACGGGGAGCAAAATGAAGGGAGAGCTGTTGTGCGTCCTGCTGCTTTGTGGAGTGGCGTTCACGTTGCCTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019018_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGCTTGAGCTGTCCAGG
R:
CTGGTCAGGCAACGTGAACG
Band lengths:
180-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]