RnoEX0067111 @ rn6
Exon Skipping
Gene
ENSRNOG00000028521 | Plekhm1
Description
pleckstrin homology and RUN domain containing M1 [Source:RGD Symbol;Acc:1308010]
Coordinates
chr10:91486182-91492591:-
Coord C1 exon
chr10:91492506-91492591
Coord A exon
chr10:91488941-91489036
Coord C2 exon
chr10:91486182-91486429
Length
96 bp
Sequences
Splice sites
3' ss Seq
CACCTGCCTCTGCCTCTCAGGTG
3' ss Score
9.34
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTGTCATGTGAGTCTCCTTGAGAACTGCTGCCCGAGTGGAAATGCTCTCAGTGGAGAATGGCCTGGACCCTCGGGCTGCCATCCAG
Seq A exon
GTGCTGGGATTAATGGCGTGCCCACCACTCCTGGCCTCACTCCTGAGAAGACCCTGATTCAATTCCTGGTAACCCAGTGTTCGTTCACTACTGCCT
Seq C2 exon
GTCATCAAGAAGAAGCTAGTGGGATCTGTGAAGGCCCTGCAGAAACAGCATGTGTCTCTGGACACAGTGGTCACCAGTGAAGATGGAGATGCTAACACCATGTGCAGTGCCCTGGAGGCCGTGTTCATCCATGGCTTGCATGCCAAGTACATCCGTGCTGAGGCTGGCGGCAAAAGGAAGAAGCACACTCATCAGAAGCCTCTGCCTCAGCCTGTCTTCTGGCCCCTTCTGAAAGCTGTCACCCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028521_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0275914=RUN=PU(37.3=60.2)
Main Inclusion Isoform:
ENSRNOT00000037147fB10911
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGTGGAAATGCTCTCAG
R:
GGGCACTGCACATGGTGTTAG
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]