RnoEX0067126 @ rn6
Exon Skipping
Gene
ENSRNOG00000023760 | Plekhm3
Description
pleckstrin homology domain containing M3 [Source:RGD Symbol;Acc:1307151]
Coordinates
chr9:71520712-71561358:-
Coord C1 exon
chr9:71561295-71561358
Coord A exon
chr9:71555120-71555385
Coord C2 exon
chr9:71520712-71520869
Length
266 bp
Sequences
Splice sites
3' ss Seq
ACTTTATGTTTGTATTTTAGACA
3' ss Score
9.48
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
AATTTTCCCCAGAGAATACCTCCTTCAGCAGATCCACCTGTACTCTCTCGCTGACCTGCAGCAG
Seq A exon
ACAGGTCTTGCTGTGTCACCCAGGATGATTTCCGGTCTTCCTGCTTTAGCCTCCAGAGTGCTGGGATTGCAAGCATGTACTACAAGCCTAGCTAATTTTTGTGGATTTTCTGAATACTCACTACACATCCCTGGACGGCAGACTTCTCAGCTGAGATTTTGCAGTATTGCCTTATTCATCACTGTGACATAAATGTCTGTCAGAAGTGTTGTGCAGGAACAGTGTATCTGGTGGTCCACTTCAGAGGCTCCCTAGAGCTGTAGCTA
Seq C2 exon
GTGATAGAGGGAAAGCTGGCTCCGTTCTTGGGCAAGGTCATTAAATTCGCCACCGCACACGTCTACAGCTGCAGTCTCTGTAGCCAGAAAGGCTTCATCTGTGAAATCTGTAACAATGGCGAGATCCTCTACCCCTTCGAGGACATTTCAACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023760-'14-12,'14-11,15-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(10.3=100)
A:
PF139011=DUF4206=PD(30.5=84.4)
C2:
PF139011=DUF4206=FE(25.5=100)
Main Inclusion Isoform:
ENSRNOT00000032782fB10913
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCCCCAGAGAATACCTCCT
R:
CTGCTTGTTGAAATGTCCTCGA
Band lengths:
220-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]