RnoEX0067153 @ rn6
Exon Skipping
Gene
ENSRNOG00000017223 | Plg
Description
plasminogen [Source:RGD Symbol;Acc:619893]
Coordinates
chr1:48522408-48527891:-
Coord C1 exon
chr1:48527785-48527891
Coord A exon
chr1:48524461-48524602
Coord C2 exon
chr1:48522408-48522553
Length
142 bp
Sequences
Splice sites
3' ss Seq
GTATTTCCTGTAATCACCAGACG
3' ss Score
5.3
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
CCCAGCCACCATCACAGATAATGTCATCCCAGCTTGTCTGCCATCTCCAAATTATGTGGTTGCCGACCGGACACTGTGTTACATCACCGGCTGGGGAGAAACGAAAG
Seq A exon
ACGGATTACACATTTTCTGAGCCTAAGACAAGTCTAGTCCAAGTGTCTGGGGGAAGGCACTGTTCATTATTTCTTGGCTGCTCTGTGCTAGCAAAGCAATCGCATGCTACAAGACTATGGAAAAAGCCGTGCTTGCAGACCG
Seq C2 exon
GGACTCCAGGTGCCGGCCGTCTCAAGGAGGCCCAGCTGCCCGTGATCGAGAACAAGGTGTGCAACCGCGCTGAGTATCTAAACAACAGAGTCAAATCCACCGAGCTCTGTGCCGGGCATCTGGCTGGTGGCATCGACAGTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017223-'28-26,'28-25,29-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(16.1=100)
A:
PF0008921=Trypsin=PD(2.3=42.9)
C2:
PF0008921=Trypsin=FE(21.4=100)
Main Inclusion Isoform:
ENSRNOT00000023368fB10919
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCCACCATCACAGATAA
R:
CAACTGTCGATGCCACCAGC
Band lengths:
249-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]