RnoEX0067750 @ rn6
Exon Skipping
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2217247-2220454:+
Coord C1 exon
chr3:2217247-2217452
Coord A exon
chr3:2218635-2218702
Coord C2 exon
chr3:2220323-2220454
Length
68 bp
Sequences
Splice sites
3' ss Seq
ATGTATCCTCCCTCTCCTAGGAT
3' ss Score
10.81
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GATGTCAACATTTTGTTTGTGGTCTCGGGGATGCTGCATGTGTACCAGCAAAAGATTGACAGCCTGGAGGACACTTGCCTGTTTCTCACCCATCCTGGGGAGATGGTGGGGCAACTGGCAGTGCTCACTGGAGAGCCCCTAATGTTCACCATCAGAGCCAACCGGGACTGCAGCTTTCTGTCCATCTCGAAGGCCCACTTCTATGA
Seq A exon
GATTTGCTGGAATGCCTCTGGCCTGCTTCCCTGATGCTGTGCTCTCTGATACTTTCAGCATGCTGAGG
Seq C2 exon
GATCATGAGGAAGCGGCCGGATGTCGTCCTGGGCGTGGCCCACACAGTTGTGAGGAGGATGTCGTCCTTTGTGCGGCAGATTGACTTTGCACTGGACTGGATGGAAGTAGAGGCTGGGCGTGCCATATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(73.9=100)
A:
PF0002724=cNMP_binding=PD(4.5=33.3)
C2:
PF0002724=cNMP_binding=PD(7.6=15.6),PF0002724=cNMP_binding=PU(12.1=24.4)
Main Inclusion Isoform:
ENSRNOT00000011633fB11002
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCACCATCAGAGCCAACC
R:
CCCAGCCTCTACTTCCATCCA
Band lengths:
182-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]