RnoEX0068249 @ rn6
Exon Skipping
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11265205-11267347:+
Coord C1 exon
chr3:11265205-11265301
Coord A exon
chr3:11265699-11265832
Coord C2 exon
chr3:11267255-11267347
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACAGTCCATTCCTCTGTCAGTCA
3' ss Score
5.18
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCATGATGTCGCTGCCCCGCTGAGCCCCCATTCTCAAGAAGTCTCCTGCTACATTGACTATAACATCTCCATGCCTGCCCAGAACCTCTGGAAACTG
Seq A exon
TCAGGGCAGGAACTTAAGCTGAAACCATGGTGGAAACACTGGCTCACTCCCAGATTCAAGCTTTCATATACAGTCCACGAAAATCTGCCTAGGGAATGGAGCTGCCCACAGTGGGCTGGGCCTTCCAACATCAG
Seq C2 exon
GACATTGTAAACAGAGAGTCCAACCAGGATACCTGGAAGACTATCTTGTCAGAAGTGCGCTTTGTGCATGTGAATACATCTGCCATCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477-'18-24,'18-23,19-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(18.2=100)
A:
PF0281514=MIR=PD(5.3=13.3)
C2:
PF0281514=MIR=FE(17.0=100)
Main Inclusion Isoform:
ENSRNOT00000015214fB11082
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGATGTCGCTGCCCCG
R:
CAAGATGGCAGATGTATTCACATGC
Band lengths:
186-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]